Source code for pybraincompare.annotate.JSONEncoder

#!/usr/bin/env python

import sys
import json
import UserDict

class Node(object):
    def __init__(self, nid, parent, name, meta = None):
        self.nid = nid
        self.parent = parent
        self.children = []
        self.name = name
        self.meta = [meta] # should be dictionary!

class NodeDict(UserDict.UserDict):
    def addNodes(self, nodes):
        """ Add every node as a child to its parent by doing two passes."""
        for i in (1, 2):
            for node in nodes:
                self.data[node.nid] = node
                if node.parent in self.data.keys():
                    if node.parent != "none" and node not in self.data[node.parent].children:
                        self.data[node.parent].children.append(node)

class NodeJSONEncoder(json.JSONEncoder):
    def default(self, node):
        if type(node) == Node:
            return {"nid":node.nid, "name":node.name, "meta":node.meta,"children":node.children}
        raise TypeError("{} is not an instance of Node".format(node))

if __name__ == "__main__":
    nodes = []

    with open(sys.argv[1]) as f:
        for row in f.readlines()[1:]:
            nid, parent, name = row.split()
            nodes.append(Node(nid, parent, name))

    nodeDict = NodeDict()
    nodeDict.addNodes(nodes)

    rootNodes = [node for nid, node in nodeDict.items()
                 if node.parent == "none"]
    for rootNode in rootNodes:
        print NodeJSONEncoder().encode(rootNode)