Pybraincompare

Semantic and computational comparison methods for brain imaging data, and visualization of outputs. Modules include:

compare

An example scatterplot image comparison, dynamically rendered using python and d3 from two raw statstical brain maps and an atlas image, [is available](http://vbmis.com/bmi/share/neurovault/scatter_atlas.html). A new addition (beta) is a [canvas based scatterplot](http://vbmis.com/bmi/project/brainatlas) that can render 150K + points.

annotate

This module will let you convert a triples data structure defining relationships in an ontology to a an interactive d3 visualization, demo is [is available](http://vbmis.com/bmi/share/neurovault/ontology_tree.html). Reverse inference tree also [in development](http://vbmis.com/bmi/share/neurovault/reverse_inference.html).

network

This module will work with visualization of functional connectivity data, demo is [is available](http://vbmis.com/bmi/share/neurovault/connectogram.html) and see examples folder for how to run with your data.

QA for Statistical Maps

This module will generate a web report for a list of statistical maps, demo [is available](http://www.vbmis.com/bmi/project/qa/index.html). Much work to be done! Please submit an issue if you have feedback.

histogram

An example histogram using python and chartJS from a sigle brain map [is available](http://vbmis.com/bmi/share/neurovault/histogram.html).

Contents:

Indices and tables